Colorado Care Network

Diagnosis-directed therapy

Domain 2 of 5Patients: care maps

This domain covers any condition in which the diagnosis directs treatment. Its five current cohorts: lysosomal storage disorders, hypophosphatasia, transthyretin amyloidosis (hereditary and wild-type), inherited metabolic disease and neurogenetic disease. Each is a group of diseases with an approved or imminent disease-modifying therapy, and each has adults who are undiagnosed, or diagnosed late, because the early presentation resembled a common condition.

Why this is a domain

These conditions make the clearest case for recognition in primary care, because a diagnosis leads to a therapy. The therapies exist: enzyme replacement for the lysosomal storage disorders and for hypophosphatasia,1 stabilizers and silencers for transthyretin amyloidosis,2 dietary and pharmacologic control for the inherited metabolic diseases, gene-targeted therapy for spinal muscular atrophy, and a first disease-modifying agent for Friedreich ataxia. What is missing is recognition. Adult patients with these conditions reach a diagnosis years after first symptoms, through cardiology, neurology, orthopedics or gastroenterology, each seeing one organ.3 4

The cohorts are organized by therapy pathway rather than by organ, because the pathway is what the anchor physician has to manage: who confirms the diagnosis, who prescribes, where the infusion happens, and how the family is tested.

The five cohorts

2. Diagnosis-directed therapy Patients, care maps
CohortWho it coversStatusSlack
Lysosomal storage disorders
Identifying which adults with an unexplained cardiomyopathy, neuropathy, splenomegaly or myopathy have a lysosomal disease
Pompe, Gaucher, Fabry, ASMD, attenuated MPS, alpha-mannosidosis: ERT, substrate reduction and chaperonesSeeking a lead#cohort-lysosomal-storage
Hypophosphatasia
The cause of a low alkaline phosphatase in an adult, and whether it explains the fractures, the dental history or the pain
HPP and the related bone and mineral disorders, including X-linked hypophosphatemiaSeeking a lead#cohort-hypophosphatasia
Transthyretin amyloidosis
Heart failure, neuropathy or carpal tunnel as the first sign of amyloid, and whether it is hereditary
hATTR, with HoFH, familial chylomicronemia and lipodystrophy on the same infusion and specialty pathwayForming#cohort-transthyretin-amyloidosis
Inherited metabolic disease
Identifying which adults with an unexplained encephalopathy, liver disease, psychiatric presentation or recurrent crisis have a treatable inborn error
PKU, urea cycle disorders, homocystinuria, CTX, acute hepatic porphyria, Wilson, AATD, hemochromatosisSeeking a lead#cohort-inherited-metabolic
Neurogenetic
Identifying a treatable diagnosis in a progressive neurologic presentation
Adult SMA, Friedreich ataxia, primary mitochondrial disease, Huntington, and the treatable diagnosis in a progressive neurologic presentationLaunch#cohort-neurogenetic

Chart of the cohorts in this domain.

How the care maps differ here

The Establish year follows the same pattern in every cohort: a screening test that primary care can order (an enzyme assay, a dried blood spot, an alkaline phosphatase, a scintigraphy study, a biochemical panel), a confirmatory genetic test, and a documented decision about therapy eligibility. The genetics role includes cascade testing from the first visit when the condition is inherited, because relatives may have a treatable form.

The Treat year covers starting therapy, arranging infusion or specialty pharmacy, measuring response against a defined endpoint, and handling the payer or cash-price conversation. The Sustain year is maintenance, monitoring for antibody or adverse effects, screening new therapies against the diagnosis each year, and the family.

The anchor role is unusually important. Specialists prescribe these therapies, but the patient's ongoing care takes place in primary care, and the anchor physician is often the only clinician who sees the patient between infusions.

What the domain needs from the provider rosters

Esoteric assays (biochemical genetics, enzyme activity, biomarkers), clinical expertise in metabolic and biochemical genetics, empiric therapies (infusion centers and specialty pharmacies willing to work with an independent practice), and specialists in cardiology, neurology, hepatology and endocrinology.

Starting references

  1. Whyte MP, Greenberg CR, Salman NJ, et al. Enzyme-replacement therapy in life-threatening hypophosphatasia. N Engl J Med. 2012;366(10):904-913. doi:10.1056/NEJMoa1106173
  2. Maurer MS, Schwartz JH, Gundapaneni B, et al. Tafamidis treatment for patients with transthyretin amyloid cardiomyopathy. N Engl J Med. 2018;379(11):1007-1016. doi:10.1056/NEJMoa1805689
  3. Grabowski GA, Kishnani PS, Alcalay RN, et al. Challenges in Gaucher disease: perspectives from an expert panel. Mol Genet Metab. 2025;145(1):109074. doi:10.1016/j.ymgme.2025.109074
  4. Geberhiwot T, Wasserstein M, Wanninayake S, et al. Consensus clinical management guidelines for acid sphingomyelinase deficiency (Niemann-Pick disease types A, B and A/B). Orphanet J Rare Dis. 2023;18(1):85. doi:10.1186/s13023-023-02686-6
  5. Parikh S, Goldstein A, Karaa A, et al. Patient care standards for primary mitochondrial disease: a consensus statement from the Mitochondrial Medicine Society. Genet Med. 2017;19(12). doi:10.1038/gim.2017.107

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Colorado Care Network. Diagnosis-directed therapy. Version 2026-11-01.